Pulsed ultrasound promotes secretion of anti-inflammatory extracellular vesicles from skeletal myotubes via elevation of intracellular calcium level
Abstract
The regulation of inflammatory responses is an important intervention in biological function and macrophages play an essential role during inflammation. Skeletal muscle is the largest organ in the human body and releases various factors which mediate anti-inflammatory/immune modulatory effects. Recently, the roles of extracellular vesicles (EVs) from a large variety of cells are reported. In particular, EVs released from skeletal muscle are attracting attention due to their therapeutic effects on dysfunctional organs and tissues. Also, ultrasound (US) promotes release of EVs from skeletal muscle. In this study, we investigated the output parameters and mechanisms of US-induced EV release enhancement and the potential of US-treated skeletal muscle-derived EVs in the regulation of inflammatory responses in macrophages. High-intensity US (3.0 W/cm2) irradiation increased EV secretion from C2C12 murine muscle cells via elevating intracellular Ca2+ level without negative effects. Moreover, US-induced EVs suppressed expression levels of pro-inflammatory factors in macrophages. miRNA sequencing analysis revealed that miR-206-3p and miR-378a-3p were especially abundant in skeletal myotube-derived EVs. In this study we demonstrated that high-intensity US promotes the release of anti-inflammatory EVs from skeletal myotubes and exert anti-inflammatory effects on macrophages.
eLife assessment
This study illuminates the effects of ultrasound-induced extracellular vesicle interactions with macrophages. It provides solid data offering insights that will be potentially useful in exploring therapeutic approaches to inflammation modulation, by suggesting that ultrasound-treated myotube vesicles can suppress macrophage inflammatory responses.
https://doi.org/10.7554/eLife.89512.3.sa0Introduction
Inflammation is a crucial response to defend the body from infection. However, excess and prolonged inflammation can also be harmful and needs to be tightly regulated (Funes et al., 2018). Macrophages play a leading role in the innate immune system, causing inflammation during infection (Hirayama et al., 2017). Therefore, regulating the condition of macrophages is a major therapeutic strategy for the control of excess inflammation. Various organs including skeletal muscle are known to release anti-inflammatory factors. Skeletal muscle is the largest organ in the human body accounting for 40% of the body weight (Trovato et al., 2019) and responsible for whole-body metabolism, energy homeostasis, and locomotion. Recently, skeletal muscle is attracting attention as a secretory organ of anti-inflammatory factors (Trovato et al., 2019), and extracellular vesicles (EVs) are responsible for transporting various factors from skeletal muscle to target organs or cells. EVs are nano-sized vesicles secreted by most types of cells and facilitate cell-to-cell communication (Trovato et al., 2019; Raposo and Stoorvogel, 2013; EL Andaloussi et al., 2013) through transportation of proteins, mRNAs, and miRNAs (Zomer et al., 2010), leading to regulation of immune response (EL Andaloussi et al., 2013), tissue regeneration (Bittel and Jaiswal, 2019), and cell proliferation/differentiation (Matsuzaka et al., 2016). EVs from skeletal muscle have also been reported to exert therapeutic effects in various dysfunctional organs (Rome et al., 2019; Bei et al., 2017; Madison et al., 2014) and our previous study revealed that skeletal myotube-derived EVs attenuate inflammatory responses of macrophages (Yamaguchi et al., 2023). EVs from mesenchymal stem cells (MSC) also have been reported to suppress inflammatory responses in lipopolysaccharide (LPS)-induced macrophages (Harrell et al., 2019; Xin et al., 2020; Shao et al., 2020) and Kim et al. reported the anti-inflammatory action of MSC EVs depended on the concentration of EVs (Kim et al., 2019). Therefore, an enhancement of EV release may enhance the anti-inflammatory effects of muscle EVs.
Ultrasound (US) irradiation is used as a non-invasive therapy and has physiological effects including cell proliferation, suppression of inflammatory signaling (Ueno et al., 2021), and increase cell membrane permeability (Ma et al., 2022). Our previous study revealed that high-intensity US can promote EV release (Maeshige et al., 2021). An increase in intracellular Ca2+ concentration is one of the effects of US irradiation, and elevation of intracellular Ca2+ is a key factor for EV secretion (Savina et al., 2003). Previous studies have reported that low-intensity pulsed ultrasound (LIPUS) promotes EV release from cells (Deng et al., 2021; Li et al., 2023). Meanwhile, US increases Ca2+ influx into cells by increasing cell membrane permeability through sonoporation (Fan et al., 2010), but its action has been reported to be dependent on US intensity (Zeghimi et al., 2015), so adopting a higher intensity than LIPUS is expected to promote EV release from skeletal muscle cells more efficiently. In addition, stimulus-induced EVs can be altered in their contents and effects compared to EVs released under normal conditions (Kawanishi et al., 2023; Li et al., 2023), thus EVs released from skeletal muscle by US may have different effects. This study aimed to clarify the intensity dependency of EV release enhancement by US and anti-inflammatory effects of US-induced skeletal muscle-derived EVs on macrophages.
Results
US irradiation has no negative effect on myotube viability, protein content, and energy metabolism
To measure the viability of US-irradiated myotubes, MTT assay and Zombie Red immunofluorescence staining were performed. Our results showed no significant decrease in all US groups (Figure 1A and B). To assess the potential effect of US irradiation on cultured myotubes, the total protein content in myotubes was measured and no significant difference was observed among all groups (Figure 1C). Furthermore, citrate synthase (CS) activity was measured to determine the effect of US on energy metabolism. CS activity in each group did not decrease in the US-treated myotubes (Figure 1D).
US irradiation enhances release of EVs from myotubes
The concentration of EVs in the 3W group was two times higher than that in the control group. The 1W and 2W groups also showed an increase in EVs concentration, which was 1.64 and 1.68 times higher than that in the control group (Figure 2A), but no significant difference. Regarding size distribution, the majority of released EVs were in the range of 50–150 nm and the size of EVs did not change in the US groups (Figure 2B).
Intracellular Ca2+ upregulation mediates US-induced enhancement of EV release from myotubes
To investigate the mechanism of the effect of US on EV release enhancement, we measured intracellular Ca2+ levels in myotubes after US irradiation. Compared to the control group, Ca2+ level in the 3W group was significantly increased immediately after US irradiation. The 2W group only showed a tendency of increased intracellular Ca2+ level, but no significant difference (Figure 3A).
Next, we investigated the calcium dependency of the promotive effect of US on EV release using Ca2+-free medium. Here, we used the US intensity of 3.0 W/cm2, which showed the greatest EV release enhancement effect. The groups with Ca2+-free medium showed significantly lower levels of Ca2+ compared with the control and US groups (Figure 3B). The concentration of EVs in US group was significantly increased compared to the control group while this increase was not observed in absence of Ca2+ (Figure 3C). Most of the extracted EVs were 50–150 nm in diameter (Figure 3D). Myotube viability did not decrease by Ca2+-free culture (Figure 3E).
US-induced EVs exert anti-inflammatory effects on macrophages
To investigate the anti-inflammatory effect of myotube EVs on macrophages, qPCR analysis was performed. While C2C12 myotube conditioned medium only showed a tendency to suppress the expression of pro-inflammatory factors, US-treated C2C12 myotube conditioned medium (US-CM) significantly suppressed the expression of pro-inflammatory Il-1b and Il-6, compared to LPS-stimulation alone (LPS), and expression of Il-1b in US-CM significantly decreased compared to non-treated C2C12 myotube conditioned medium. Furthermore, the expression of Il-1b and Il-6 were not suppressed when the EVs were eliminated from the conditioned media (Figure 4A). When EV concentrations were equated, the upregulation of the anti-inflammatory effect of myotube EVs by US was not observed (Figure 4B). Myotube EVs did not decrease macrophage viability (Figure 4C). EV concentration in each group is shown in Figure 4D.
miRNA profile change in myotube EVs by US
To investigate the effect of US on miRNA profile in myotube-derived EVs, miRNA sequencing analysis on EVs was performed. A total of 524 miRNAs were identified by proteomic quantitative analysis. Twenty-nine miRNAs were expressed specifically in the control group, and 81 miRNAs were expressed specifically in the US group (Figure 5A). Lists of miRNAs specific to each group are shown in Supplementary file 1. Although miRNAs specific to each group were identified, they accounted for only 0.014% of the total miRNAs, and 99.99% of total miRNAs were common to the control and US groups (Figure 5B). According to the standard of a fold change ≥2 or ≤0.5 as well as an FDR <0.05, we screened 13 upregulated miRNAs (Table 1) and 14 downregulated miRNAs (Table 2) in the EV group versus the control group. Differentially expressed miRNAs are displayed as a volcano plot (Figure 5C). The top 10 abundant miRNAs and their proportion to the total miRNAs are shown (Figure 5D). In both the control and US groups, the two most abundant miRNAs, miR-206-3p and miR-378a-3p, accounted over 60% of the total.
Discussion
This study demonstrated the facilitatory effect of US irradiation on EV release from cultured skeletal myotubes and the enhanced anti-inflammatory effect of EVs from US-irradiated myotubes. These findings contribute to the development of non-invasive complementary therapy using skeletal muscle-derived EVs for various inflammatory diseases.
Skeletal muscle-derived EVs have been reported to exert therapeutic effects in various dysfunctional organs (Rome et al., 2019), including prevention of cardiac damage by ischemia-reperfusion injury (Bei et al., 2017), enhancement of neurite outgrowth in motor neurons (Madison et al., 2014), and enhancement of angiogenesis (Ma et al., 2018). Furthermore, since skeletal muscle EVs mediate cross-talk between skeletal muscle and other tissues (Whitham et al., 2018), methods to enhance the release of skeletal muscle-derived EVs are potentially beneficial in the treatment of various diseases and health management.
Our results showed that the intracellular Ca2+ level significantly increased in the US-irradiated group, indicating that US irradiation promoted the uptake of Ca2+ to myotubes. This result is supported by previous reports investigating Ca2+ uptake by US in various types of cells (Ambattu et al., 2020; Scheffer et al., 2014; Fan et al., 2010; Lentacker et al., 2014; Honda et al., 2004). In the present study, the effect of US on Ca2+ uptake was observed in an intensity-dependent manner. US irradiation has been reported to exert a physiological action to promote transient membrane permeabilization, which can promote the Ca2+ influx pathways (Fan et al., 2010; Cao et al., 2019; Zhou et al., 2008), and the efficiency of permeabilization depends on the intensity of irradiation (Kumon et al., 2009; Zeghimi et al., 2015). Thus, the change of cell membrane structure is supposed to be the mechanism of the enhancement of Ca2+ influx. In this study, EV release was promoted by US of 3.0 W/cm2, and this effect was cancelled by inhibition of Ca2+. Since intracellular Ca2+ level is reported to be a factor that promotes EVs release (Savina et al., 2003; Taylor et al., 2020), US irradiation was shown to enhance EV release from myotubes via promotion of influx of Ca2+.
We found that C2C12 myotube conditioned medium was capable of suppressing LPS-induced inflammatory responses in macrophages, and this effect was enhanced by US irradiation to myotubes. In addition, the anti-inflammatory effects were cancelled by eliminating EVs from the culture medium. This indicates that EVs in the culture medium were responsible for this effect, which is consistent with our previous study (Yamaguchi et al., 2023).
IL-1β is essential for an adequate acute inflammatory response to a variety of pathogens and injuries, but its excessive overexpression leads to sepsis, septic shock, or chronic inflammation (Dinarello, 2009; Piccioli and Rubartelli, 2013). IL-6 also contributes to host defense, however, dysregulated continual synthesis of it leads to prolonged chronic inflammation (Tanaka et al., 2014) and can drive tumorigenesis (Chang et al., 2014). Since blockade of these factors is reported to alleviate several inflammatory diseases (Chevalier et al., 2005; Emsley et al., 2005; Choy et al., 2002; Nishimoto et al., 2004; Ito et al., 2004; Yokota et al., 2005), eliciting the anti-inflammatory effects of skeletal muscle-derived EVs by US and suppressing the production of IL-1β and IL-6 suggests a new therapeutic strategy against inflammatory diseases utilizing US.
Meanwhile, it has been reported that the contents of EVs released from cells vary depending on the cellular microenvironment and that certain factors are selectively internalized in response to specific stimuli. The results of our analysis on miRNAs in EVs revealed that the EVs from US-exposed myotubes contain several unique miRNAs. However, only about 0.01% of the total miRNAs were altered by US irradiation, suggesting that the change was very small. Furthermore, no upregulation of the anti-inflammatory effect of myotube EVs by US was observed when the EV concentrations were equalized. Thus, the enhancement of the anti-inflammatory effect of myotube conditioned medium by US irradiation is assumed to be due to changes in the amount of EVs, not to changes in the content of EVs. Consistent with our results, a previous study reported that MSC-EVs regulated inflammatory responses in macrophages concentration dependently (Kim et al., 2019).
Analysis on miRNA profiles in the EVs revealed that the two most abundant miRNAs, miR-206-3p and miR-378a-3p, were common to both control and US EVs, and these two types accounted for more than 60% of the total miRNA contents in the both conditions. The most abundant miR-206 is a member of the skeletal muscle-specific myo-miR family of miRNAs (Carpi et al., 2020). It is reported that miR-206 targets IL-17A and REG3A and suppresses macrophage inflammation (Huang et al., 2020). Furthermore, Lin et al. reported that transfection of miR-mimic-206-3p into macrophages suppressed macrophage inflammation by targeting PPP3CA and transfection of miR-inhibitor-206-3p increased the level of inflammatory factors in macrophages (Lin et al., 2020). miR-378a is highly expressed in skeletal muscle and is involved in metabolism and mitochondrial energy homeostasis (Krist et al., 2015). Rückerl et al. identified miR-378a-3p as a factor contributing to the induction of anti-inflammatory macrophage reprogramming through IL-4-induced gene transcription by targeting Akt (Rückerl et al., 2012). In addition, Kris et al. reported that miR-378a has anti-inflammatory effects on macrophages and its deficiency enhances severity of inflammation (Krist et al., 2020). Based on these previous studies, it is assumed that myotube-derived EVs elicited the anti-inflammatory effects in macrophages by delivering these miRNAs. Additionally, miR-206 has been reported to modulate fat metabolism in diabetes (Wu et al., 2017) and control the tumorigenesis process of cancer (Ding et al., 2017), and miR-378a has been shown to inhibit cardiac hypertrophy (Ganesan et al., 2013) and cancer growth (Zeng et al., 2017) and alleviate spinal cord injury (Zhang et al., 2021), indicating that these miRNAs are expected to have therapeutic effects against various diseases. Therefore, promoting the release of EVs containing these factors by US stimulation to skeletal muscle is potentially effective in the prevention and treatment of various diseases, and further investigations of its effects on other pathological conditions are expected.
On the other hand, while this study attributed the anti-inflammatory effect of US on skeletal muscle-derived EVs to increased EV release, we identified several miRNAs increased in US-induced EVs. Further studies are needed on this point for a more detailed understanding about the effect of US on skeletal muscle.
In summary, this study showed that US irradiation promoted the secretion of myotube-derived EVs which have anti-inflammatory effects and suggested that US irradiation to skeletal muscles is a potent candidate as a novel treatment for various inflammatory disorders.
Materials and methods
Cell culture
Request a detailed protocolC2C12 myoblasts were purchased from the American Type Culture Collection (ATCC, USA). Myoblasts were cultured on 35 mm dishes (Iwaki) in Dulbecco’s modified Eagle medium (DMEM, Wako Junyaku Co., Ltd., Japan) supplemented with 10% fetal bovine serum (FBS) at 37°C under 5% CO2. At 90% confluence, differentiation into myotubes was initiated by changing the growth medium to differentiation medium (DMEM supplemented with 2% horse serum). Differentiation was continued for 6–7 days, refreshing the medium every 2 days. Efficiency of differentiation was confirmed by observing the contractile ability using electrical stimulation (Supplementary file 2). US was applied to the myotubes for 5 min after changing the differentiation medium to serum-free medium. After incubation for 12 hr, the culture medium was collected to extract EVs.
To generate bone marrow-derived macrophages (BMDMs), bone marrow cells from femur and tibias of 7-week-old male C57BL/6 mice were harvested and cultured in Petri dishes with RPMI 1640 (DMEM, Wako Junyaku Co., Ltd., Japan) supplemented with 10% FBS, 1% penicillin/streptomycin, 1% L-glutamine, and 25% L929 cell supernatant for 8 days. Differentiated macrophages were harvested and plated in 12-well tissue culture plates with macrophage culture media (RPMI 1640 supplemented with 10% FBS, 1% penicillin/streptomycin, 1% L-glutamine, and 10% L929 cell supernatant) for subsequent experiments.
US irradiation
Request a detailed protocolTo expose the myotubes to US, the culture dish was placed on the probe of an US transducer (SONICTIZER SZ-100, Minato Medical Science Co., Ltd., Japan). Coupling gel was applied to fill the space between the probe surface and the bottom of the dish and sterilized silicone was inserted into the culture medium and fixed to the dish with a distance of 2 mm from the bottom of the dish (Figure 6). The US parameters used were as follows: duty cycle of 20%; acoustic frequency of 1 MHz; duration of 5 min; repetition frequency of 100 Hz; beam nonuniformity ratio of 2.0; and effective radiation area of 8.0 cm2 (Maeshige et al., 2021). In this study, three exposure intensities of 1.0 W/cm2, 2.0 W/cm2, and 3.0 W/cm2 were investigated. After US irradiation, the myotubes were incubated at 37°C for 12 hr. We adopted the intensities of 1.0–3.0 W/cm2 because output intensities of 0.1–2.5 W/cm2 are typically applied for therapeutic purposes in clinical practice (Draper, 2014). After US irradiation, we monitored the temperature of the culture medium with a thermometer (TM-947SDJ, SATO-SHOJI, Japan) and confirmed it below 37°C to distinguish the advantage of US therapy from its thermal effect.
To investigate the involvement of intracellular Ca2+ in the mechanism of EV release from myotubes, Ca2+-free medium (Nacalai Tesque Inc, Japan) was used. The culture medium for Ca2+-free groups was changed from normal medium (serum-free DMEM with calcium) to Ca2+-free medium (serum-free DMEM without calcium) 1 hr before US irradiation.
EV isolation
Request a detailed protocolEVs were isolated from the conditioned medium of cultured myotubes with polymer precipitation as previously reported (Ter-Ovanesyan et al., 2021). The conditioned medium was collected and centrifuged for 15 min at 3000×g to remove cell debris. The supernatant was transferred to a sterile vessel and added Exo Quick-TC (System Biosciences, Palo Alto, CA, USA) (supernatant: Exo Quick reagent = 5:1). The tubes were stored overnight at 4°C and centrifuged at 1500×g for 30 min at 4°C. All traces of fluid were removed and the pellet was resuspended with 100 μL of PBS.
EV characterization
Request a detailed protocolA tunable resistive pulse sensing technology (qNano, IZON system; Izon Science Ltd., Christchurch, New Zealand) was used to measure the concentration, size distribution, and diameter of extracted EVs. The system was calibrated for voltage, stretch, pressure, and baseline current using standard beads: CPC100 (concentration; 1.0×1010 beads/mL). An NP100 nanopore (for 50–200 nm size range) was used and data analysis was performed by a qNano IZON software.
Macrophage treatment with conditioned medium of C2C12 myotubes
Request a detailed protocolAt 3 hr after US irradiation, the conditioned media were collected and centrifuged (1500×g, 10 min). Obtained supernatant was supplemented with 10% FBS, 1% penicillin/streptomycin, 1% L-glutamine, and 10% L929 cell supernatant and applied to BMDMs. After 1.5 hr treatment by myotube conditioned medium, BMDMs were incubated with macrophage culture media overnight (12 hr). Subsequently, BMDMs were treated with 100 ng/mL LPS for 1.5 hr for pro-inflammatory marker quantification. To clarify the involvement of EVs in the anti-inflammatory effects on macrophages, EV-depleted culture medium was added to macrophages. EV depletion was performed using Exo Quick-TC reagent as previously reported (Mathew et al., 2019).
MTT assay
Request a detailed protocolMTT assay was performed to evaluate cell viability 24 hr after US irradiation to myotubes. BMDM viability was also assessed 24 hr after EV treatment to examine the effect of the treatment with C2C12 conditioned medium on macrophages. The cells were incubated for 3 hr at 37°C with MTT solution (MTT, Wako Junyaku Co., Ltd., Japan) dissolved in culture medium at 0.5 mg/mL, then dissolved in DMSO. The absorbance at 595 nm was measured using a microplate reader.
Zombie Red immunostaining
Request a detailed protocolC2C12 myotube viability was assessed at 24 hr after US irradiation or treatment with 1% povidone-iodine (positive control) by Zombie Red immunostaining. This reagent is an amine-reactive fluorescent dye that is non-permeant to live cells but permeant to cells with a compromised plasma membrane. Myotubes were washed twice with PBS, stained with Zombie Red (1 : 1000) for 15 min at 37°C, and fixed with 4% paraformaldehyde for 30 min. Nuclei were stained with DAPI for 5 min at 37°C. The images were captured with a 10× objective on a BX50 (OLYMPUS, Japan).
Total protein assay
Request a detailed protocolTotal protein content in myotubes was measured at 24 hr after US irradiation. The cells were washed with PBS and collected into tubes using a cell scraper. After centrifugation at 13,000 rpm for 20 s, the pellet was processed with 100 μL of PRO- PREP reagent (iNtRON Biotechnology Co., Ltd. Japan), followed by incubation on ice for 20 min. After centrifugation at 13,000 rpm for 5 min, the protein concentration was analyzed using the Bradford method.
CS activity
Request a detailed protocolEnergy metabolism was evaluated 24 hr after US irradiation to the myotube by CS assay as previously reported (Srere, 1963). Briefly, the samples of total protein extraction were mixed with the following solution: distilled water (DW)+3mMAcetylCoA+1mMDTNB (1 mM DTNB+1 M Tris-HCL). Oxaloacetate was added to the mixture and the absorbance at 415 nm was measured using a microplate reader every 2 min for 10 min at 37°C.
Intracellular Ca2+ levels
Request a detailed protocolThe concentration of intracellular Ca2+ in the medium of C2C12 myotubes was measured using a Metallo assay calcium kit LS (CPZIII) (Metallogenics Ltd., Japan). This method determines intracellular Ca2+ levels by observing the coloration in the visible region caused by the chelate complex formation between chlrophosphonazo-III (CPZIII) and Ca2+. Briefly, the cells were collected and centrifuged at 13,000 rpm for 20 s to remove the supernatant. The pellet was suspended with a mixture of 200 μL of RIPA buffer (RIPA Lysis Buffer, SCB Ltd., Japan) and 1 μL of hydrochloric acid (2 M). After incubation for 30 min, the samples were centrifuged at 10,000 rpm for 10 min and the Ca2+ concentration in the supernatant was analyzed. Ca2+ was dissociated by low pH and collected as the supernatant. Finally, the absorbance was converted to concentration (mM) according to the manufacturer’s protocol.
Quantitative real-time PCR
Request a detailed protocolTo measure gene expression in BMDMs, mRNA was isolated with TRIzol RNA Isolation protocol and used to make cDNA using iScript cDNA Synthesis Kit (Bio-Rad). The StepOne Real-Time PCR System was used to analyze the samples under the following conditions: 95°C (3 min), 40 cycles of 95°C (10 s), and 60°C (30 s). The reaction mixture consisted of 8 μL cDNA, 1.5 μL 10× buffer, 0.3 μL 10 mM dTNPs, 1.5 μL 5 μM primers for each gene used in the study (F+R), 3.58 μL H2O, 0.075 μL Go Taq DNA polymerase and 0.045 μL 2×SYBR green (Invitrogen). Target genes were the pro-inflammatory markers Il-1b and Il-6 (Moore et al., 2013). Relative expression values for target genes were calculated by normalization to the expression of glyceraldehyde-3-phosphate dehydrogenase (Gapdh). Data was analyzed using the ΔΔCT method. Sequences for qPCR primers are shown in Supplementary file 3.
miRNA sequencing
Request a detailed protocolmiRNA was extracted from myotube-derived EVs using TRIzol reagent (Takara Biotechnology, Japan) according to the manufacturer’s instructions. Raw miRNA sequence data were obtained using an Illumina NovaSeq 6000 machine. After acquiring the raw data, the fold change (mean of each miRNA in the US group/mean of each RNA in the control group) and p-values were calculated for each miRNA. These p-values were used to calculate the false discovery rate (FDR) for each miRNA, which was further used as a filter to identify significant miRNAs with a fold change ≥2 or ≤0.5 and an FDR <0.05. The volcano plots were generated using the R 3.5.3 software.
Statistical analysis
Request a detailed protocolStatistical analysis was conducted using Statistical 4 (OMS, Tokyo, Japan). For two-group comparison, Student’s t-test was used and for multiple comparisons, ANOVA (Tukey’s multiple comparison test as post hoc) was used. Power analysis using G Power software (Kang, 2021) was conducted to determine the sample size for each experiment to provide a power of at least 0.8 at a significance level of 0.05 (α=0.05, β=0.2).
Data availability
The RNA-seq data can be found in NCBI database (BioProject ID: PRJNA1044751).
-
NCBI BioProjectID PRJNA1044751. Ultrasound-induced extracellular vesicles from C2C12 myotubes.
References
-
Contribution of extracellular vesicles in rebuilding injured musclesFrontiers in Physiology 10:828.https://doi.org/10.3389/fphys.2019.00828
-
The IL-6 feed-forward loop: a driver of tumorigenesisSeminars in Immunology 26:48–53.https://doi.org/10.1016/j.smim.2014.01.007
-
Safety study of intraarticular injection of interleukin 1 receptor antagonist in patients with painful knee osteoarthritis: a multicenter studyThe Journal of Rheumatology 32:1317–1323.
-
Immunological and inflammatory functions of the interleukin-1 familyAnnual Review of Immunology 27:519–550.https://doi.org/10.1146/annurev.immunol.021908.132612
-
Facts and misfits in ultrasound therapy: steps to improve your treatment outcomesEuropean Journal of Physical and Rehabilitation Medicine 50:209–216.
-
Extracellular vesicles: biology and emerging therapeutic opportunitiesNature Reviews. Drug Discovery 12:347–357.https://doi.org/10.1038/nrd3978
-
A randomised phase II study of interleukin-1 receptor antagonist in acute stroke patientsJournal of Neurology, Neurosurgery, and Psychiatry 76:1366–1372.https://doi.org/10.1136/jnnp.2004.054882
-
Intracellular delivery and calcium transients generated in sonoporation facilitated by microbubblesJournal of Controlled Release 142:31–39.https://doi.org/10.1016/j.jconrel.2009.09.031
-
Implications of macrophage polarization in autoimmunityImmunology 154:186–195.https://doi.org/10.1111/imm.12910
-
The phagocytic function of macrophage-enforcing innate immunity and tissue homeostasisInternational Journal of Molecular Sciences 19:92.https://doi.org/10.3390/ijms19010092
-
Role of intracellular calcium ions and reactive oxygen species in apoptosis induced by ultrasoundUltrasound in Medicine & Biology 30:683–692.https://doi.org/10.1016/j.ultrasmedbio.2004.02.008
-
Downregulated MiR-206 expression promotes the proliferation and migration of macrophages by regulating IL-17A/REG3A pathwayEuropean Journal of Inflammation 18:205873922091749.https://doi.org/10.1177/2058739220917490
-
Sample size determination and power analysis using the G*Power softwareJournal of Educational Evaluation for Health Professions 18:17.https://doi.org/10.3352/jeehp.2021.18.17
-
Electrical pulse stimulation-induced muscle contraction alters the microRNA and mRNA profiles of circulating extracellular vesicles in miceAmerican Journal of Physiology. Regulatory, Integrative and Comparative Physiology 324:R761–R771.https://doi.org/10.1152/ajpregu.00121.2022
-
The role of miR-378a in metabolism, angiogenesis, and muscle biologyInternational Journal of Endocrinology 2015:281756.https://doi.org/10.1155/2015/281756
-
miR-378a influences vascularization in skeletal musclesCardiovascular Research 116:1386–1397.https://doi.org/10.1093/cvr/cvz236
-
Spatiotemporal effects of sonoporation measured by real-time calcium imagingUltrasound in Medicine & Biology 35:494–506.https://doi.org/10.1016/j.ultrasmedbio.2008.09.003
-
Understanding ultrasound induced sonoporation: definitions and underlying mechanismsAdvanced Drug Delivery Reviews 72:49–64.https://doi.org/10.1016/j.addr.2013.11.008
-
Moderate exercise enhances endothelial progenitor cell exosomes release and functionMedicine and Science in Sports and Exercise 50:2024–2032.https://doi.org/10.1249/MSS.0000000000001672
-
Enhancement of astaxanthin incorporation by pulsed high-intensity ultrasound in LPS-stimulated macrophagesJournal of Medical Ultrasonics 49:125–132.https://doi.org/10.1007/s10396-022-01189-4
-
Macrophages in atherosclerosis: a dynamic balanceNature Reviews. Immunology 13:709–721.https://doi.org/10.1038/nri3520
-
The secretion of IL-1β and options for releaseSeminars in Immunology 25:425–429.https://doi.org/10.1016/j.smim.2013.10.007
-
Extracellular vesicles: exosomes, microvesicles, and friendsThe Journal of Cell Biology 200:373–383.https://doi.org/10.1083/jcb.201211138
-
Skeletal muscle-released extracellular vesicles: state of the artFrontiers in Physiology 10:929.https://doi.org/10.3389/fphys.2019.00929
-
Exosome release is regulated by a calcium-dependent mechanism in K562 cellsThe Journal of Biological Chemistry 278:20083–20090.https://doi.org/10.1074/jbc.M301642200
-
Citryl-CoA: an substrate for the citrate-cleavage enzymeBiochimica et Biophysica Acta (BBA) - Specialized Section on Enzymological Subjects 73:523–525.https://doi.org/10.1016/0926-6569(63)90146-9
-
IL-6 in inflammation, immunity, and diseaseCold Spring Harbor Perspectives in Biology 6:a016295.https://doi.org/10.1101/cshperspect.a016295
-
Ca2+ mediates extracellular vesicle biogenesis through alternate pathways in malignancyJournal of Extracellular Vesicles 9:1734326.https://doi.org/10.1080/20013078.2020.1734326
-
Extracellular vesicles: delivery vehicles of myokinesFrontiers in Physiology 10:522.https://doi.org/10.3389/fphys.2019.00522
-
Pulsed ultrasound prevents lipopolysaccharide-induced muscle atrophy through inhibiting p38 MAPK phosphorylation in C2C12 myotubesBiochemical and Biophysical Research Communications 570:184–190.https://doi.org/10.1016/j.bbrc.2021.07.039
-
miR-378 suppresses the proliferation, migration and invasion of colon cancer cells by inhibiting SDAD1Cellular & Molecular Biology Letters 22:12.https://doi.org/10.1186/s11658-017-0041-5
-
miR-378-3p alleviates contusion spinal cord injury by negatively regulating ATG12International Journal of Experimental Pathology 102:200–208.https://doi.org/10.1111/iep.12400
-
Effects of extracellular calcium on cell membrane resealing in sonoporationJournal of Controlled Release 126:34–43.https://doi.org/10.1016/j.jconrel.2007.11.007
-
Exosomes: Fit to deliver small RNACommunicative & Integrative Biology 3:447–450.https://doi.org/10.4161/cib.3.5.12339
Peer review
Reviewer #1 (Public Review):
Summary:
The authors embarked on a journey to understand the mechanisms and intensity-dependency of ultrasound (US)-induced extracellular vesicle (EV) release from myotubes and the potential anti-inflammatory effects of these EVs on macrophages. This study builds on their prior work from 2021 that initially reported US-induced EV secretion.
Strengths:
1. The finding that US-treated myotube EVs can suppress macrophage inflammatory responses is particularly intriguing, hinting at potential therapeutic avenues in inflammation modulation.
Weaknesses:
1. The exploration of output parameters for US induction appears limited, with only three different output powers (intensities) tested, thus narrowing the scope of their findings.
2. Their claim of elucidating mechanisms seems to be only partially met, with a predominant focus on the correlation between calcium responses and EV release.
3. While the intracellular calcium response is a dynamic activity, the method used to measure it could risk a loss of kinetic information.
4. The inclusion of miRNA sequencing is commendable; however, the interpretation of this data fails to draw clear conclusions, diminishing the impact of this segment.
While the authors have shown the anti-inflammatory effects of US-induced EVs on macrophages, there are gaps in the comprehensive understanding of the mechanisms underlying US-induced EV release. Certain aspects, like the calcium response and the utility of miRNA sequencing, were not fully explored to their potential. Therefore, while the study establishes some findings, it leaves other aspects only partially substantiated.
https://doi.org/10.7554/eLife.89512.3.sa1Reviewer #2 (Public Review):
Summary:
The work demonstrates that high-intensity ultrasound produces a release of extracellular vesicles from murine myotubes that is dependent on ultrasound intensity. It shows that this increase in extracellular vesicles is abolished in a nominally zero Ca2+ solution. It then shows that these vesicles reduce the mRNA levels of IL-1b and IL-6 in murine bone marrow-derived macrophages and uses a dilution technique to demonstrate that the number, but not the type of vesicles is responsible for this change in mRNA expression. It also compares the miRNA levels in constitutively-released vesicles with those released by high-intensity ultrasound.
Strengths:
The experiments are logically sequenced. It is very helpful to see assessment of the viability of the preparations.
The results are presented fairly clearly and the statistical approach is described. The findings are reasonably clear and the writing is succinct.
Weaknesses:
The work is quite limited in scope and of limited novelty, largely recapitulating work from the first-named author's own recent publications.
Thus, perhaps the most significant weakness of this study is that it makes claims of mechanisms, or of clinical or therapeutic relevance, that are not supported or even addressed by the study.
The aspects of the current work which are novel are hard to identify because the statement of aims is too broad and therefore encapsulates previous work. In addition, the introduction and discussion are vague and fail, for example, to mention the cell types used in the previous studies that are quoted. This means that it is not obvious from the Introduction whether the present study is at all novel.
The size of the study is quite small, with most experiments employing n = 4. This inevitably means that, for example, there is no significant effect of the lower power levels of ultrasound despite shifts in the mean values that might be of interest. Thus, the study appears underpowered. This problem is compounded by a failure to use appropriate analysis methods in the studies looking at dose-responses, where a regression analysis might be more appropriate than multiple individual t-tests / ANOVA.
The assessment of the role of Ca2+ is important but incomplete. Measurement of whole-cell Ca2+ levels is not really a substitute for measuring cytosolic Ca2+ as cell volume changes and sarcoplasmic reticulum Ca2+ changes would greatly influence the possible meaning of the findings. Furthermore, a statement that Ca2+ increase causes the vesicle release could only be supported by experiments that increase intracellular Ca2+, such as the use of a Ca2+ ionophore.
mRNA expression levels of IL-1b and IL-6 are reported. There should also be a report of a non-inflammatory mRNA to act as a control.
https://doi.org/10.7554/eLife.89512.3.sa2Author response
The following is the authors’ response to the original reviews.
Reviewer #1 (Public Review):
While the manuscript was reasonably clearly written and the methodology and results sound, it is not clear what the real contribution of the work is. The authors' findings - that ultrasonic stimulation is capable of altering intracellular Ca2+ to effect an increase in EV secretion from cells as long as the irradiation does not affect cell viability-is well established (see, for example, Ambattu et al., Commun Biol 3, 553, 2020; Deng et al., Theranostics, 11, 9 2021; Li et al., Cell Mol Biol Lett 28, 9, 2023). Moreover, the authors' own work (Maeshige et al., Ultrasonics 110, 106243, 2021) using the exact same stimulation (including the same parameters, i.e., intensity and frequency) and cells (C2C12 skeletal myotubes) reported this. Similarly, the authors themselves reported that EV secretion from C2C12 myotubes has the ability to regulate macrophage inflammatory response (Yamaguchi et al., Front Immunol 14, 1099799, 2023). It would then stand to reason that a reasonable and logical deduction from both studies is that the ultrasonic stimulation would lead to the same attenuation of inflammatory response in macrophages through enhanced secretion of EVs from the myotubes.
We appreciate your comments and suggestions. Ambattu et al. in their report stated that the high frequency acoustic stimulation they used has a less effect on cell membranes than the 1 MHz ultrasound that we used in this study. Deng et al. and Li et al. applied low intensity pulsed ultrasound (LIPUS) (about 300 mW/cm2) in their studies. In this study, we assumed that ultrasound induced increase in EV secretion via increased Ca2+ influx into the cell by enhancing cell membrane permeability, and since it has been reported that the effect of ultrasound-induced enhancement in cell membrane permeability increases in an intensity-dependent manner (Zeghimi et al., 2015), we applied intensities of 1-3 W/cm2. While previous studies using LIPUS have used 15 minutes of irradiation, the high intensity employed in this study was capable to promote EV release after 5 minutes of stimulation. We have added the above explanation to the introduction in the revised version of the manuscript. Furthermore, while the previous studies used other types of cells, the main purpose of this study was to determine the optimal ultrasound intensity to promote EV release from skeletal muscle and to determine whether ultrasound-induced EVs are qualitatively altered compared to those released under normal conditions, thereby validating the anti-inflammatory effects of ultrasound-induced muscle EVs. Our previous study (Maeshige et al. 2021) used the same muscle cells but did not investigate an intensity dependence, so this is the first study to show that ultrasound irradiation promotes EV release in an intensity-dependent manner in muscle. In addition, we would like to emphasize that this study also goes beyond our previous study in the method of stimulation. Specifically, the present study a more efficient 5-minute irradiation protocol was used, whereas the previous study have adopted a 9-minute intervention.
We understand that the results of this study are predictable from two of our previous studies, but since stimulus-induced EVs may be qualitatively different compared to EVs released under normal conditions (Kawanishi et al., 2023; Li et al., 2023), it is worthwhile to examine the effects of stimulus-induced EVs. This explanation has been added in the introduction of revised version of the manuscript.
The authors' claim that 'the role of Ca2+ in ultrasound-induced EV release and its intensity-dependency are still unclear', and that the aim of the present work is to clarify the mechanism, is somewhat overstated. That ultrasonic stimulation alters intracellular Ca2+ to lead to EV release, therefore establishing their interdependency and hence demonstrating the mechanism by which EV secretion is enhanced by the ultrasonic stimulation, was detailed in Ambattu et al., Commun Biol 3, 553, 2020. While this was carried out at a slightly higher frequency (10 MHz) and slightly different form of ultrasonic stimulation, the same authors have appeared to since establish that a universal mechanism of transduction across an entire range of frequencies and stimuli (Ambattu, Biophysics Rev 4, 021301, 2023).
In this study, we showed that Ca2+ is involved in ultrasound-induced EV release using Ca2+-depleted culture medium, but since we did not examine the mechanism in more detail than that, we modified the introduction to avoid overstating.
Similarly, the anti-inflammatory effects of EVs on macrophages have also been extensively reported (Li et al., J Nanobiotechnol 20, 38, 2022; Lo Sicco et al., Stem Cells Transl Med 6, 3, 2017; Hu et al., Acta Pharma Sin B 11, 6, 2021), including that by the authors themselves in a recent study on the same C2C12 myotubes (Yamaguchi et al., Front Immunol 14, 1099799, 2023). Moreover, the authors' stated aim for the present work - clarifying the mechanism of the anti-inflammatory effects of ultrasound-induced skeletal muscle-derived EVs on macrophages - appears to be somewhat redundant given that they simply repeated the microRNA profiling study they carried out in Yamaguchi et al., Front Immunol 14, 1099799, 2023. The only difference was that a fraction of the EVs (from identical cells) that they tested were now a consequence of the ultrasound stimulation they imposed.
That the authors have found that their specific type of ultrasonic stimulation maintains this EV content (i.e., microRNA profile) is novel, although this, in itself, appears to be of little consequence to the overall objective of the work which was to show the suppression of macrophage pro-inflammatory response due to enhanced EV secretion under the ultrasonic irradiation since it was the anti-inflammatory effects were attributed to the increase in EV concentration and not their content.
In comparison with the current study, our previous study observed EVs secreted only from muscle in normal condition. However, the purpose of the current study is to answer the question whether ultrasound treatment could enhance the effect of EVs and change the encapsuled miRNAs. Although we identified several miRNAs which are specifically induced by ultrasound, further studies are needed to demonstrate the effect of those miRNAs derived from ultrasound-treated muscles on macrophages. We have mentioned this limitation in the discussion of the revised manuscript.
Reviewer #1 (Recommendations For The Authors):
This reviewer felt that there was a lack of novelty in the manuscript and that the results of the work confirm conclusions that could have been logically deduced from a combination of the authors' preceding work (Maeshige et al., Ultrasonics 110, 106243, 2021 and Yamaguchi et al., Front Immunol 14, 1099799, 2023). The contribution of the work could perhaps be elevated if the authors were to focus more on whether the 0.01% of altered miRNA has any impact on cellular activity.
As mentioned above, the present study is novel compared to our previous studies for examining the effects of ultrasound-induced EVs. In addition, the fact that EV content is maintained after ultrasound stimulation rather indicates that ultrasound can be used as a highly stable and effective method of promoting EV release.
A further, albeit more minor, recommendation is to omit lines 73-80 in the manuscript. The discussion on physical exercise for promoting EV secretion together with the non-invasive nature of ultrasound therapy is very misleading as it creates the impression that the authors' work can be applied as a direct intervention on a patient. This was not shown in the work, which was limited to irradiating cells ex vivo.
We agree and have edited the introduction.
Reviewer #2 (Public Review):
1. The exploration of output parameters for US induction appears limited, with only three different output powers (intensities) tested, thus narrowing the scope of their findings.
We appreciate your comments and suggestions. The intensity of LIPUS is basically in the ~0.3 W/cm2 range, and in clinical practice, ~2.5 W/cm2 is considered to be a safe intensity to irradiate the human body (Draper, 2014). Therefore, 3.0 W/cm2 is also a fairly high intensity for the human body, so 3.0 W/cm2 was set as the maximum intensity in this study.
1. Their claim of elucidating mechanisms seems to be only partially met, with a predominant focus on the correlation between calcium responses and EV release.
The focus of this study was to examine the effects of ultrasound-induced EVs on the inflammatory responses of macrophages and not on the detailed mechanism of calcium involvement. We revised the introduction to make the purpose of this study clearer.
1. While the intracellular calcium response is a dynamic activity, the method used to measure it could risk a loss of kinetic information.
Although we did not examine the kinetic action of calcium, we believe that Ca2+ is at least proven to be involved to the EV-promoting effect of ultrasound on muscle, since the enhancement of EV release by ultrasound was canceled by elimination of calcium from the culture medium. Furthermore, real-time measurement of Ca2+ after ultrasound irradiation has shown that ultrasound irradiation promotes Ca2+ influx into cells immediately after the irradiation. (Fan et al., 2010).
1. The inclusion of miRNA sequencing is commendable; however, the interpretation of this data fails to draw clear conclusions, diminishing the impact of this segment.
Although we identified several miRNAs which are specifically induced by ultrasound, further studies are needed to demonstrate the effect of those miRNAs derived from US-treated muscles on macrophages. We have mentioned this limitation in the discussion of the revised version of manuscript.
While the authors have shown the anti-inflammatory effects of US-induced EVs on macrophages, there are gaps in the comprehensive understanding of the mechanisms underlying US-induced EV release. Certain aspects, like the calcium response and the utility of miRNA sequencing, were not fully explored to their potential. Therefore, while the study establishes some findings, it leaves other aspects only partially substantiated.
As stated above, the main purpose of this study was to examine the effects of ultrasound-induced EVs on the inflammatory responses of macrophages. We set detailed investigation on the mechanism of ultrasound-induced EV release as our next step and have revised the introduction and discussion of the revised manuscript to make the purpose and limitation of this study clearer.
Reviewer #2 (Recommendations For The Authors):
The author's exploration into the role of Ca2+ in the context of US-induced EV release is a timely endeavor, especially given the growing interest in understanding the cellular dynamics associated with external stimulants like ultrasound. Nevertheless, the manuscript does not unambiguously define the mechanism of action and its broader implications.
Ca2+ has long been established as a versatile intracellular messenger, governing a myriad of cellular processes. There is a wealth of methodologies, from specific inhibitors to specialized assays, tailored to dissect the role of Ca2+ in diverse contexts. In the specific case of US-induced Ca2+ activity, the expectation would be for a clear, mechanistic delineation of how this ionic surge drives EV release. Yet, this study stops short of providing those details. It is imperative for the authors to dig deeper, employing a diverse set of tools at their disposal, to fill this knowledge gap.
Recently, it was reported that increased Ca2+ influx causes an increase in EV secretion via the plasma membrane repair protein annexin A6 (Williams et al. 2023). However, the full mechanism of how an increase in intracellular Ca2+, let alone ultrasound-induced Ca2+, promotes EV release has not yet been understood yet, and it is beyond the scope of this study to elucidate this part of the mechanism.
Furthermore, the paper raises another important question: Which specific proteins are pivotal in orchestrating the US-induced Ca2+ entry in myotubes? Addressing this would not only enhance the manuscript's novelty but would also contribute a vital piece to the puzzle of understanding US-cellular interactions.
Ultrasound increases Ca2+ uptake by increasing cell membrane permeability by sonoporation, rather than via protein reactions (Fan et al., 2010). We added this explanation to the introduction in the revised version of manuscript.
Lastly, while the report touches upon the influence of varying US output power on EV concentrations, it piques curiosity about potential effects beyond the 3W/cm2 threshold. It's observed that cell viability isn't compromised at this intensity, suggesting room for further exploration. Would a higher intensity yield a proportionally increased EV release, or is there a saturation point? Conversely, could intensities beyond 3W/cm2 begin to have deleterious effects on the cells? These are crucial considerations that merit investigation to realize the full potential of US as a modulatory tool, both for research and therapeutic applications.
As mentioned above, 3.0 W/cm2 was adopted as the maximum intensity in this study with reference to the intensity used in clinical practice. In addition, since the cytotoxicity and therapeutic effects of ultrasound depend not only on intensity but also on other parameters such as duty cycle, acoustic frequency, pulse repetition frequency and duration, so a comprehensive analysis of the effects of ultrasound on cells at various parameter settings would be valuable as an independent study.
https://doi.org/10.7554/eLife.89512.3.sa3Article and author information
Author details
Funding
Japan Society for the Promotion of Science (17H04747)
- Noriaki Maeshige
Japan Society for the Promotion of Science (21H03852)
- Noriaki Maeshige
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Acknowledgements
This study was supported by JSPS KAKENHI (grant number 17H04747 and 21H03852). We are grateful to Dr. P Kent Langston (Department of Immunology, Harvard Medical School and Evergrande Center for Immunologic Diseases, Harvard Medical School, Boston, MA, USA) for providing insightful advice.
Ethics
The animal experimentation was conducted according to the protocol reviewed and approved by the Institutional Animal Care and Use Committee of Kobe University (Permit No. P210803).
Senior and Reviewing Editor
- Christopher L-H Huang, University of Cambridge, United Kingdom
Version history
- Sent for peer review: June 2, 2023
- Preprint posted: June 14, 2023 (view preprint)
- Preprint posted: October 2, 2023 (view preprint)
- Preprint posted: November 22, 2023 (view preprint)
- Version of Record published: December 6, 2023 (version 1)
Cite all versions
You can cite all versions using the DOI https://doi.org/10.7554/eLife.89512. This DOI represents all versions, and will always resolve to the latest one.
Copyright
© 2023, Yamaguchi et al.
This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Metrics
-
- 34
- Page views
-
- 4
- Downloads
-
- 0
- Citations
Article citation count generated by polling the highest count across the following sources: Crossref, PubMed Central, Scopus.
Download links
Downloads (link to download the article as PDF)
Open citations (links to open the citations from this article in various online reference manager services)
Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)
Further reading
-
- Genetics and Genomics
- Immunology and Inflammation
Thymus-originated tTregs and in vitro induced iTregs are subsets of regulatory T cells. While they share the capacity of immune suppression, their stabilities are different, with iTregs losing their phenotype upon stimulation or under inflammatory milieu. Epigenetic differences, particularly methylation state of Foxp3 CNS2 region, provide an explanation for this shift. Whether additional regulations, including cellular signaling, could directly lead phenotypical instability requires further analysis. Here, we show that upon TCR (T cell receptor) triggering, SOCE (store-operated calcium entry) and NFAT (nuclear factor of activated T cells) nuclear translocation are blunted in tTregs, yet fully operational in iTregs, similar to Tconvs. On the other hand, tTregs show minimal changes in their chromatin accessibility upon activation, in contrast to iTregs that demonstrate an activated chromatin state with highly accessible T cell activation and inflammation related genes. Assisted by several cofactors, NFAT driven by strong SOCE signaling in iTregs preferentially binds to primed-opened T helper (TH) genes, resulting in their activation normally observed only in Tconv activation, ultimately leads to instability. Conversely, suppression of SOCE in iTregs can partially rescue their phenotype. Thus, our study adds two new layers, cellular signaling and chromatin accessibility, of understanding in Treg stability, and may provide a path for better clinical applications of Treg cell therapy.
-
- Immunology and Inflammation
- Microbiology and Infectious Disease
Pyroptosis and apoptosis are two forms of regulated cell death that can defend against intracellular infection. When a cell fails to complete pyroptosis, backup pathways will initiate apoptosis. Here, we investigated the utility of apoptosis compared to pyroptosis in defense against an intracellular bacterial infection. We previously engineered Salmonella enterica serovar Typhimurium to persistently express flagellin, and thereby activate NLRC4 during systemic infection in mice. The resulting pyroptosis clears this flagellin-engineered strain. We now show that infection of caspase-1 or gasdermin D deficient macrophages by this flagellin-engineered S. Typhimurium induces apoptosis in vitro. Additionally, we engineered S. Typhimurium to translocate the pro-apoptotic BH3 domain of BID, which also triggers apoptosis in macrophages in vitro. During mouse infection, the apoptotic pathway successfully cleared these engineered S. Typhimurium from the intestinal niche but failed to clear the bacteria from the myeloid niche in the spleen or lymph nodes. In contrast, the pyroptotic pathway was beneficial in defense of both niches. To clear an infection, cells may have specific tasks that they must complete before they die; different modes of cell death could initiate these ‘bucket lists’ in either convergent or divergent ways.